Basic Information
Locus ID:
jg27352
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2763155 | 2765449 | - | jg27352 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.49 | 73,040.15 Da | 43.27 | 90.97 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 393 | 661 | 2.2E-32 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 114 | 171 | 2.3E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 43 | 84 | 9.4E-8 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 206 | 226 | 1.7 | IPR001611 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 394 | 662 | 1.5E-51 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 44 | 240 | 3.4E-29 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 466 | 669 | 1.0E-38 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 358 | 465 | 3.6E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 43 | 203 | 4.4E-33 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 204 | 251 | 1.5E-9 | IPR032675 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 390 | 665 | 27.283579 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 346 | 372 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 339 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 325 | 339 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35390.1 | Leucine-rich repeat protein kinase family protein. Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis. | 0 |
| RefSeq | XP_011101568.1 | pollen receptor-like kinase 4 [Sesamum indicum] | 0 |
| Q40902 | Pollen receptor-like kinase 1 OS=Petunia integrifolia OX=4103 GN=PRK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9URQ9 | pollen receptor-like kinase 4 OS=Sesamum indicum OX=4182 GN=LOC105179622 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology