Basic Information
Locus ID:
jg27327
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2608638 | 2609519 | - | jg27327 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 32,408.21 Da | 66.96 | 76.45 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 109 | 152 | 5.12423E-20 | - |
| Pfam | PF13639 | Ring finger domain | 109 | 152 | 8.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 90 | 161 | 3.3E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 79 | 158 | 6.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 110 | 151 | 7.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 110 | 152 | 12.090947 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 293 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011072704.1 | RING-H2 finger protein ATL3 [Sesamum indicum] | 0 |
| P0C035 | RING-H2 finger protein ATL60 OS=Arabidopsis thaliana OX=3702 GN=ATL60 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9STL8 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105157887 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology