Basic Information
Locus ID:
jg27310
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2527216 | 2528772 | - | jg27310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.41 | 57,727.57 Da | 51.20 | 76.20 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 22 | 58 | 4.3E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 15 | 58 | 3.66E-8 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 23 | 61 | 1.4E-8 | - |
| SMART | SM00256 | fbox_2 | 26 | 66 | 4.7E-6 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 20 | 61 | 9.841896 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 267 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051116831.1 | uncharacterized protein LOC127241699 [Andrographis paniculata] | 0 |
| TrEMBL | A0A5A7QDB0 | F-box family protein OS=Striga asiatica OX=4170 GN=STAS_19126 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 9 | jg27307, jg27308, jg27310, jg27311, jg27356, jg27357 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2019.V1.1 |
| Plantaginaceae | Plantago ovata | 13 | Pov_00000234, Pov_00000235, Pov_00000236, Pov_00006650 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006708900 |