Basic Information
Locus ID:
jg27270
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2276796 | 2281239 | - | jg27270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.72 | 56,439.07 Da | 44.84 | 92.79 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 338 | 468 | 6.20744E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 129 | 327 | 5.17346E-131 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 351 | 459 | 9.5E-29 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 150 | 311 | 7.5E-40 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 194 | 479 | 3.89E-73 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 334 | 498 | 1.1E-57 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 116 | 333 | 1.5E-65 | IPR027417 |
| SMART | SM00487 | ultradead3 | 144 | 341 | 1.0E-55 | IPR014001 |
| SMART | SM00490 | helicmild6 | 378 | 459 | 1.5E-31 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 156 | 326 | 29.019188 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 337 | 498 | 25.865398 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 125 | 153 | 10.241162 | IPR014014 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 272 | 280 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_006426588.1 | eukaryotic initiation factor 4A-8 [Citrus clementina] | 0 |
| P41381 | Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | V4SGV6 | Eukaryotic initiation factor 4A-11 OS=Citrus clementina OX=85681 GN=CICLE_v10025724mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology