Basic Information
Locus ID:
jg27259
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD-40 repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2205541 | 2205810 | - | jg27259 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.69 | 10,199.86 Da | 51.45 | 74.61 | 0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 12 | 44 | 1.1E-10 | IPR022052 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 79 | 3.3E-10 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19520.1 | Transducin family protein / WD-40 repeat family protein. Controls flowering. | 0 |
| RefSeq | XP_012845931.1 | PREDICTED: WD-40 repeat-containing protein MSI4-like [Erythranthe guttata] | 0 |
| O22607 | WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A022S1T6 | CAF1C_H4-bd domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a006195mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27259 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g13230 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-12721, nbis-gene-56840, nbis-gene-57397 |