Basic Information
Locus ID:
jg27258
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2197951 | 2202551 | - | jg27258 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.32 | 44,637.72 Da | 50.58 | 84.57 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 238 | 270 | 0.0013 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 191 | 225 | 0.28 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 280 | 319 | 3.7E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 114 | 151 | 0.014 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 46 | 386 | 2.66E-42 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 401 | 4.5E-84 | IPR015943 |
| SMART | SM00320 | WD40_4 | 111 | 151 | 0.14 | IPR001680 |
| SMART | SM00320 | WD40_4 | 185 | 225 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 279 | 319 | 1.8E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 38 | 77 | 340.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 230 | 270 | 7.6E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 385 | 5.5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 237 | 270 | 9.071966 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 225 | 10.040596 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 286 | 319 | 12.981398 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 286 | 319 | 10.785595 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 237 | 270 | 10.809215 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 160 | 180 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G19520.1 | Transducin family protein / WD-40 repeat family protein. Controls flowering. | 0 |
| RefSeq | XP_020553090.1 | WD-40 repeat-containing protein MSI4-like [Sesamum indicum] | 0 |
| O22607 | WD-40 repeat-containing protein MSI4 OS=Arabidopsis thaliana OX=3702 GN=MSI4 PE=1 SV=3 | 0 | |
| TrEMBL | A0A8M8V9C9 | WD-40 repeat-containing protein MSI4-like OS=Sesamum indicum OX=4182 GN=LOC105163489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg13580, jg27258, jg31690, jg32926 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_11035, gene_5646 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015315, Ah028883 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_7g176780 |
| Amaranthaceae | Salicornia bigelovii | 3 | Sbi_jg25365, Sbi_jg33537, Sbi_jg9219 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg19368, Seu_jg8233 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00002918, GOSA_00011143 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73248, Sgl76767 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000009150, gene:ENSEOMG00000033744 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.7AG0000310, CQ.Regalona.r1.8AG0014470 ... |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30116720, pistato.v30258240 |
| Apiaceae | Apium graveolens | 4 | Ag5G01674, Ag8G00241, Ag9G01089, AgUnG00772 |
| Arecaceae | Cocos nucifera | 1 | COCNU_02G001380 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC103709571, gene-LOC103711179, gene-LOC103720121 |
| Asparagaceae | Asparagus officinalis | 3 | AsparagusV1_01.2358.V1.1, AsparagusV1_03.2940.V1.1 ... |
| Asteraceae | Flaveria trinervia | 4 | Ftri14G19218, Ftri18G21942, Ftri1G12254, FtriNA08905 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT2G19520.1, AT4G29730.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10022653m.g.v1.0, Thhalv10025026m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g32900.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB02g015640.2N, BniB03g068830.2N, BniB04g024920.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 2 | Ceq02G0874, Ceq06G0853 |
| Casuarinaceae | Casuarina glauca | 2 | Cgl02G0885, Cgl06G0878 |
| Cymodoceaceae | Cymodocea nodosa | 2 | gene.Cymno01g11580, gene.Cymno06g03770 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0591s00008.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g24090 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG01.44, evm.TU.LG07.1238 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00002934, Pov_00025814 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb3G16981, Lb3G16984, Lb3G18747, Lb5G29398 |
| Poaceae | Echinochloa crus-galli | 2 | BH02.3017, CH02.3511 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0030700, gene-QOZ80_1BG0080660 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0284120.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_054860 |
| Poaceae | Oryza coarctata | 2 | Oco01G018560, Oco02G018840 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g51300.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G252300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0602899, Pt_Chr0602945 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr02G011510, Chr03G014710, Chr08G014780, Chr0G026270 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G422600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG037590, gene_TRIDC3BG041980 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G250900.2, TraesCS3B02G280400.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb155150_P002, Zm00001eb361300_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-26268 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g10992 |
| Portulacaceae | Portulaca oleracea | 4 | evm.TU.LG05.2259, evm.TU.LG07.1132, evm.TU.LG19.335 ... |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g21310 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_10_RagTag.515, evm.TU.Scaffold_4_RagTag.1836 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-13005, nbisL1-mrna-25744 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-2561, nbisL1-mrna-6299 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-16905, nbisL1-mrna-4623 |
| Rhizophoraceae | Kandelia candel | 2 | evm.TU.utg000008l.1042, evm.TU.utg000033l.357 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00000330, Maker00014843 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-14842, nbisL1-mrna-4024 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1133, nbisL1-mrna-8191 |
| Salicaceae | Populus euphratica | 4 | populus_peu05068, populus_peu09186, populus_peu33535 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132616917, gene-LOC132618307, gene-LOC132633465 |
| Solanaceae | Solanum chilense | 2 | SOLCI001848200, SOLCI007226100 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107014851, gene-LOC107026383 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.2420_chr01_-, gene_2506 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G0340, TC10G1754 |
| Zosteraceae | Zostera marina | 1 | Zosma05g25500.v3.1 |