Basic Information
Locus ID:
jg27248
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-Box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2126921 | 2133842 | + | jg27248 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.59 | 67,917.74 Da | 48.74 | 82.77 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09612 | Jacalin | 452 | 582 | 6.93325E-54 | IPR033734 |
| Pfam | PF01419 | Jacalin-like lectin domain | 452 | 582 | 1.5E-31 | IPR001229 |
| SUPERFAMILY | SSF51101 | Mannose-binding lectins | 443 | 581 | 5.89E-40 | IPR036404 |
| SUPERFAMILY | SSF52047 | RNI-like | 72 | 230 | 1.02E-9 | - |
| Gene3D | G3DSA:2.100.10.30 | - | 428 | 582 | 6.8E-53 | IPR036404 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 17 | 261 | 1.1E-8 | IPR032675 |
| SMART | SM00915 | Jacalin_2 | 452 | 583 | 2.3E-42 | IPR001229 |
| ProSiteProfiles | PS51752 | Jacalin-type lectin domain profile. | 441 | 583 | 47.925652 | IPR001229 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G73040.1 | Mannose-binding lectin superfamily protein. | 0 |
| RefSeq | XP_020547903.1 | FBD-associated F-box protein At5g38590-like [Sesamum indicum] | 0 |
| Q9SSM3 | Jacalin-related lectin 19 OS=Arabidopsis thaliana OX=3702 GN=JAL19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5A7R7Y8 | Mannose-binding lectin superfamily protein OS=Striga asiatica OX=4170 GN=STAS_29839 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology