Basic Information
Locus ID:
jg2724
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 8941190 | 8941531 | + | jg2724 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.52 | 13,246.20 Da | 57.82 | 88.67 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12560.1 | F-box and associated interaction domains-containing protein. Encodes CPR30 (Constitutive Expresser of PR Genes 30), a F-Box protein that functions as a negative regulator of defense response. | 0 |
| RefSeq | XP_011102129.1 | F-box/kelch-repeat protein At3g23880 [Sesamum indicum] | 0 |
| Q9SU30 | F-box protein CPR1 OS=Arabidopsis thaliana OX=3702 GN=CPR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UJS2 | F-box/kelch-repeat protein At3g23880 OS=Sesamum indicum OX=4182 GN=LOC105180255 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2724 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah025637, Ah027249 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00012587 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000016227, gene:ENSEOMG00000037258 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.9AG0008680, CQ.Regalona.r1.9BG0013020 |
| Apiaceae | Apium graveolens | 3 | Ag1G00339, Ag4G01763, Ag4G02283 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG03.310 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00009381, Pov_00014464, Pov_00024395 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.457, evm.TU.LG26.579 |