Basic Information
Locus ID:
jg27118
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 1228470 | 1235881 | + | jg27118 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 41,872.52 Da | 53.02 | 82.74 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14379 | UBA1_Rad23_plant | 139 | 188 | 5.60992E-30 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 73 | 1.66675E-28 | - |
| Pfam | PF00627 | UBA/TS-N domain | 321 | 356 | 2.0E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 240 | 295 | 2.6E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 145 | 182 | 4.0E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.2E-16 | IPR000626 |
| SUPERFAMILY | SSF46934 | UBA-like | 301 | 358 | 9.96E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 237 | 303 | 1.28E-22 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 85 | 1.15E-21 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 142 | 193 | 1.51E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 138 | 188 | 2.7E-19 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.4E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 312 | 357 | 7.5E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 230 | 296 | 3.8E-27 | IPR036353 |
| SMART | SM00165 | uba_6 | 145 | 185 | 0.0035 | IPR015940 |
| SMART | SM00165 | uba_6 | 321 | 358 | 4.8E-5 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.0E-20 | IPR000626 |
| SMART | SM00727 | CBM | 236 | 281 | 2.4E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 356 | 1.8E-123 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 143 | 186 | 12.040854 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 319 | 359 | 13.342098 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.128899 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 332 | 346 | 2.0E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 266 | 288 | 2.0E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 315 | 331 | 2.0E-28 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 347 | 362 | 2.0E-28 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 128 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_011082656.1 | ubiquitin receptor RAD23b isoform X1 [Sesamum indicum] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A2G9HA40 | Ubiquitin receptor RAD23 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_09342 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology