Basic Information
Locus ID:
jg26987
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
SCD1
Description:
Domain always found downstream of DENN domain, found in a variety of signalling proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 229781 | 257933 | - | jg26987 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.16 | 133,791.73 Da | 45.61 | 89.29 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 852 | 1148 | 2.7492E-55 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 947 | 983 | 0.063 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 851 | 900 | 1.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 1030 | 1065 | 0.0066 | IPR001680 |
| Pfam | PF03455 | dDENN domain | 396 | 446 | 1.2E-6 | IPR005112 |
| Pfam | PF00400 | WD domain, G-beta repeat | 910 | 942 | 0.23 | IPR001680 |
| Pfam | PF03456 | uDENN domain | 37 | 104 | 1.1E-10 | IPR005113 |
| Pfam | PF02141 | DENN (AEX-3) domain | 125 | 306 | 5.4E-47 | IPR001194 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 853 | 1207 | 3.66E-61 | IPR036322 |
| Gene3D | G3DSA:3.40.50.11500 | - | 203 | 386 | 2.1E-42 | IPR043153 |
| Gene3D | G3DSA:3.30.450.200 | - | 1 | 177 | 3.6E-9 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 1048 | 1210 | 2.1E-19 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 817 | 1045 | 5.3E-42 | IPR015943 |
| SMART | SM00320 | WD40_4 | 905 | 942 | 0.0049 | IPR001680 |
| SMART | SM00320 | WD40_4 | 986 | 1025 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 945 | 983 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 849 | 900 | 0.024 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1167 | 1206 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1112 | 1149 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1068 | 1107 | 4.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1028 | 1065 | 1.2E-4 | IPR001680 |
| SMART | SM00800 | uDENN_cls | 3 | 105 | 9.2E-17 | IPR005113 |
| SMART | SM00801 | dDENN_cls | 365 | 433 | 1.0E-15 | IPR005112 |
| SMART | SM00799 | DENN_cls | 123 | 307 | 5.0E-64 | IPR001194 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 912 | 951 | 10.441614 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1075 | 1111 | 10.809215 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 1035 | 1074 | 10.207686 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 997 | 1034 | 10.307941 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 882 | 900 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 1075 | 1111 | 9.071966 | - |
| ProSiteProfiles | PS50211 | Tripartite DENN domain profile. | 15 | 440 | 63.337643 | IPR037516 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 952 | 992 | 12.112524 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 952 | 986 | 9.256512 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1094 | 1108 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 970 | 984 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1193 | 1207 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 1012 | 1026 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 970 | 984 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 887 | 901 | 1.5E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 1012 | 1026 | 1.5E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 773 | 799 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49040.1 | stomatal cytokinesis defective / SCD1 protein (SCD1). Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. | 0 |
| RefSeq | XP_020554255.1 | LOW QUALITY PROTEIN: DENN domain and WD repeat-containing protein SCD1 [Sesamum indicum] | 0 |
| Q8RXA7 | DENN domain and WD repeat-containing protein SCD1 OS=Arabidopsis thaliana OX=3702 GN=SCD1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8VCJ8 | LOW QUALITY PROTEIN: DENN domain and WD repeat-containing protein SCD1 OS=Sesamum indicum OX=4182 GN=LOC105176035 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg26987 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_22578 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah002039 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_5g110800, BVRB_5g110810 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg28100, Sbi_jg32435 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg7325 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00015748 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl53780, Sgl53785, Sgl59043, Sgl59048 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006812, gene:ENSEOMG00000022168 ... |
| Amaranthaceae | Chenopodium quinoa | 5 | CQ.Regalona.r1.2AG0010700, CQ.Regalona.r1.3AG0015290 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30146250 |
| Apiaceae | Apium graveolens | 1 | Ag8G00689 |
| Arecaceae | Cocos nucifera | 1 | COCNU_06G001720 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712861 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.1767.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G21468 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G49040.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10011186m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g35950.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB04g061410.2N, BniB04g061420.2N, BniB07g008560.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2407 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2546 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno16g01280 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0074s00025.v1.0, Dusal.1115s00001.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g18560 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.393 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00033367 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb7G33581, Lb7G33582, Lb7G33899, Lb7G33920 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2105, BH02.2171, CH02.2332 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0021780, gene-QOZ80_1BG0071730 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0267340.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053426 |
| Poaceae | Oryza coarctata | 1 | Oco01G013100 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g39380.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G171900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0603071, Pt_Chr0603098 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr05G016920, Chr08G009050 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G361500 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG030960, gene_TRIDC3BG035530 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G204600.3, TraesCS3B02G236700.5 ... |
| Poaceae | Zea mays | 1 | Zm00001eb160220_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29429 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g8107 |
| Portulacaceae | Portulaca oleracea | 3 | evm.TU.LG02.258, evm.TU.LG02.259, evm.TU.LG09.1496 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g09950 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.777 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-28585 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-21414 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1599 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.502 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000915 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14401 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19268 |
| Salicaceae | Populus euphratica | 3 | populus_peu28383, populus_peu29836, populus_peu29949 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633292 |
| Solanaceae | Solanum chilense | 1 | SOLCI006253400 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014520 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.14190_chr08_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0860 |
| Zosteraceae | Zostera marina | 2 | Zosma05g14010.v3.1, Zosma05g14020.v3.1 |