Basic Information
Locus ID:
jg26840
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
NTMC2T4.1
Description:
Synaptotagmin-like mitochondrial-lipid-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 10184562 | 10191155 | + | jg26840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 53,868.11 Da | 23.39 | 109.86 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 266 | 360 | 3.94172E-27 | - |
| Pfam | PF00168 | C2 domain | 264 | 360 | 1.6E-22 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 248 | 2.5E-15 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 262 | 391 | 7.89E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 261 | 418 | 6.7E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 265 | 362 | 4.0E-21 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 249 | 24.63851 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 247 | 363 | 20.435091 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 306 | 319 | 5.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 281 | 293 | 5.3E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 328 | 336 | 5.3E-6 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 478 | 497 | - | - |
| Coils | Coil | Coil | 391 | 418 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_011091137.1 | synaptotagmin-5 [Sesamum indicum] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U147 | synaptotagmin-5 OS=Sesamum indicum OX=4182 GN=LOC105171648 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology