Basic Information
Locus ID:
jg26826
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 10012175 | 10015008 | + | jg26826 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 74,539.25 Da | 39.90 | 95.24 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 415 | 677 | 5.37849E-91 | - |
| CDD | cd12087 | TM_EGFR-like | 308 | 339 | 0.00987842 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 34 | 71 | 1.8E-6 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 220 | 241 | 0.44 | IPR001611 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 413 | 674 | 1.8E-36 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 146 | 206 | 4.0E-8 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 30 | 240 | 4.16E-41 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 384 | 674 | 6.64E-56 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 31 | 144 | 7.3E-27 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 145 | 264 | 9.1E-31 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 488 | 681 | 1.5E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 372 | 487 | 1.2E-24 | - |
| SMART | SM00369 | LRR_typ_2 | 217 | 240 | 47.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 193 | 216 | 63.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 145 | 169 | 50.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 97 | 120 | 81.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 409 | 681 | 29.912504 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45340.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011093359.1 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Sesamum indicum] | 0 |
| Q93YN1 | Cold-responsive protein kinase 1 OS=Arabidopsis thaliana OX=3702 GN=CRPK1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U338 | probable LRR receptor-like serine/threonine-protein kinase At5g10290 OS=Sesamum indicum OX=4182 GN=LOC105173352 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology