Basic Information
Locus ID:
jg2678
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Proteinaceous RNase P 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 8181562 | 8191156 | + | jg2678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 80,309.96 Da | 45.24 | 83.43 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16953 | Protein-only RNase P | 454 | 680 | 1.0E-71 | IPR031595 |
| Pfam | PF17177 | Pentacotripeptide-repeat region of PRORP | 205 | 413 | 2.5E-77 | IPR033443 |
| Gene3D | G3DSA:3.40.50.11980 | - | 472 | 646 | 1.9E-233 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 213 | 683 | 1.9E-233 | IPR011990 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 291 | 325 | 8.911594 | IPR002885 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32230.1 | proteinaceous RNase P 1. RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs. | 0 |
| RefSeq | XP_011077156.1 | proteinaceous RNase P 1, chloroplastic/mitochondrial [Sesamum indicum] | 0 |
| Q66GI4 | Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PRORP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9I0C6 | ribonuclease P OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04084 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology