Basic Information
Locus ID:
jg26749
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Seed storage protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 9203576 | 9208981 | - | jg26749 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 38,587.12 Da | 36.65 | 83.18 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01428 | ADK | 41 | 137 | 6.69478E-32 | IPR000850 |
| CDD | cd16461 | RING-H2_EL5_like | 247 | 291 | 5.63853E-16 | - |
| Pfam | PF13639 | Ring finger domain | 247 | 291 | 2.7E-12 | IPR001841 |
| Pfam | PF00406 | Adenylate kinase | 35 | 131 | 8.4E-33 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 32 | 147 | 1.02E-22 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 247 | 298 | 7.95E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 221 | 297 | 3.9E-18 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 32 | 145 | 2.0E-29 | IPR027417 |
| SMART | SM00184 | ring_2 | 248 | 290 | 2.3E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 248 | 291 | 12.754832 | IPR001841 |
| ProSitePatterns | PS00113 | Adenylate kinase signature. | 108 | 119 | - | IPR033690 |
| PRINTS | PR00094 | Adenylate kinase signature | 108 | 124 | 1.9E-14 | IPR000850 |
| PRINTS | PR00094 | Adenylate kinase signature | 60 | 74 | 1.9E-14 | IPR000850 |
| PRINTS | PR00094 | Adenylate kinase signature | 32 | 45 | 1.9E-14 | IPR000850 |
| Hamap | MF_00235 | Adenylate kinase [adk]. | 35 | 145 | 21.973635 | IPR000850 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G26667.2 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. encodes a uridine 5'-monophosphate (UMP)/cytidine 5'-monophosphate (CMP) kinase. | 0 |
| RefSeq | XP_028103129.1 | UMP-CMP kinase 3-like isoform X1 [Camellia sinensis] | 0 |
| O04905 | UMP-CMP kinase 3 OS=Arabidopsis thaliana OX=3702 GN=UMK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5D2ZK11 | adenylate kinase OS=Gossypium mustelinum OX=34275 GN=E1A91_A05G444100v1 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg16509, jg26749, jg29766 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah023356 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl16842 |
| Asteraceae | Flaveria trinervia | 1 | Ftri5G33835 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT2G44578.1, AT2G44581.1, AT3G60966.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001745m.g.v1.0, Thhalv10006444m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 3 | Sp3g12620.v2.2, Sp4g26660.v2.2, Sp5g03040.v2.2 |
| Brassicaceae | Brassica nigra | 4 | BniB01g001970.2N, BniB06g002990.2N, BniB06g062760.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G2274 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-10897 |
| Poaceae | Oryza coarctata | 1 | Oco10G012280 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc08g14490 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_18_RagTag.132 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-28425, nbisL1-mrna-8164 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-1877 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14024 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000034l.11 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00018803 |
| Rhizophoraceae | Rhizophora apiculata | 8 | nbisL1-mrna-17598, nbisL1-mrna-17613, nbisL1-mrna-22800 ... |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-22931 |
| Solanaceae | Solanum chilense | 2 | SOLCI001044200, SOLCI003768800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107027701 |