Basic Information
Locus ID:
jg26747
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ABC transporter
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 9151643 | 9159902 | - | jg26747 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 165,088.95 Da | 35.28 | 103.15 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 313 | 601 | 5.91065E-94 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 938 | 1195 | 9.31102E-83 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 627 | 827 | 3.77509E-109 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1218 | 1438 | 2.15408E-125 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 313 | 580 | 1.5E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 645 | 779 | 4.8E-19 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 946 | 1147 | 1.2E-26 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1237 | 1385 | 5.0E-29 | IPR003439 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 622 | 847 | 1.46E-55 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 940 | 1202 | 9.81E-43 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1211 | 1450 | 3.35E-68 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 308 | 607 | 9.42E-34 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 622 | 854 | 6.7E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1203 | 1456 | 7.2E-81 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 298 | 610 | 1.5E-48 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 922 | 1201 | 5.8E-47 | IPR036640 |
| SMART | SM00382 | AAA_5 | 1246 | 1431 | 2.7E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 654 | 827 | 1.7E-12 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 627 | 850 | 22.202324 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 950 | 1183 | 26.914318 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1222 | 1454 | 17.18701 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 312 | 593 | 35.698788 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 752 | 766 | - | IPR017871 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60160.1 | multidrug resistance-associated protein 9. member of MRP subfamily | 0 |
| RefSeq | XP_011093464.1 | putative ABC transporter C family member 15 isoform X1 [Sesamum indicum] | 0 |
| Q9M1C7 | ABC transporter C family member 9 OS=Arabidopsis thaliana OX=3702 GN=ABCC9 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8F0ZV77 | ABC-type xenobiotic transporter OS=Rehmannia glutinosa OX=99300 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology