Basic Information
Locus ID:
jg26594
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase LUL4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 5266819 | 5281113 | - | jg26594 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 41,244.16 Da | 62.32 | 63.59 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16789 | mRING-HC-C3HC5_MGRN1_like---blasttree | 314 | 354 | 1.57797E-24 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 313 | 359 | 1.0E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 295 | 360 | 7.3E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 298 | 364 | 1.7E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 315 | 353 | 4.7E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 315 | 354 | 11.677863 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 233 | 258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 67 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 70 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051145273.1 | probable E3 ubiquitin-protein ligase LUL4 [Andrographis paniculata] | 0 |
| Q8LA32 | Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana OX=3702 GN=LUL4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GWT8 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_17685 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology