Basic Information
Locus ID:
jg26572
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
C4-type zinc-finger of DNA polymerase delta
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 4654017 | 4663961 | - | jg26572 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 85,134.02 Da | 46.45 | 58.64 | -0.99 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 353 | 381 | 8.4E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 387 | 410 | 9.0E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 345 | 382 | 1.92E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 384 | 415 | 5.4E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 345 | 383 | 9.1E-17 | - |
| SMART | SM00547 | zf_4 | 388 | 412 | 3.4E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 355 | 379 | 1.6E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 386 | 415 | 8.953225 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 353 | 382 | 10.048569 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 357 | 376 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 390 | 409 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 632 | 654 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 595 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 546 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 482 | 496 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 348 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 324 | 341 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 699 | 735 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 584 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 736 | 750 | - | - |
| Coils | Coil | Coil | 105 | 125 | - | - |
| Coils | Coil | Coil | 64 | 84 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_011092060.1 | zinc finger protein VAR3, chloroplastic [Sesamum indicum] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9U3D3 | zinc finger protein VAR3, chloroplastic OS=Sesamum indicum OX=4182 GN=LOC105172367 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology