Basic Information
Locus ID:
jg26543
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 3829657 | 3839543 | - | jg26543 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.63 | 124,666.26 Da | 39.99 | 81.22 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 485 | 1.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 913 | 946 | 5.8E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 467 | 1043 | 2.67E-43 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 972 | 1108 | 8.63E-9 | IPR011044 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 346 | 527 | 9.15E-21 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 301 | 540 | 5.2E-30 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 733 | 961 | 1.2E-25 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 964 | 1105 | 4.5E-7 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 562 | 674 | 8.4E-9 | IPR015943 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.1E-14 | IPR006595 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 864 | 904 | 3.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 0.94 | IPR001680 |
| SMART | SM00320 | WD40_4 | 996 | 1038 | 6.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 574 | 190.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 394 | 438 | 20.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1052 | 1093 | 62.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 485 | 3.1E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 0.082 | IPR001680 |
| SMART | SM00320 | WD40_4 | 907 | 946 | 5.5E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 626 | 8.937796 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.021325 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 914 | 955 | 13.449252 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.453461 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 451 | 487 | 8.676514 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 914 | 949 | 10.759232 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 487 | 10.307941 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1111 | 1133 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1133 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_011092107.1 | topless-related protein 3 [Sesamum indicum] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UD74 | topless-related protein 3 OS=Sesamum indicum OX=4182 GN=LOC105172405 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology