Basic Information
Locus ID:
jg26189
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 655236 | 663306 | - | jg26189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 64,323.82 Da | 55.63 | 71.07 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 127 | 173 | 1.7E-6 | IPR002867 |
| Pfam | PF00112 | Papain family cysteine protease | 534 | 567 | 3.3E-4 | IPR000668 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 189 | 238 | 4.0E-6 | IPR002867 |
| Pfam | PF00112 | Papain family cysteine protease | 410 | 503 | 6.3E-17 | IPR000668 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 409 | 568 | 1.37E-28 | IPR038765 |
| SUPERFAMILY | SSF57850 | RING/U-box | 120 | 175 | 8.24E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 120 | 4.62E-15 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 184 | 240 | 7.06E-9 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 396 | 513 | 7.2E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 33 | 124 | 1.4E-19 | IPR013083 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 524 | 576 | 6.4E-6 | - |
| Gene3D | G3DSA:1.20.120.1750 | - | 171 | 266 | 3.7E-8 | - |
| SMART | SM00647 | ibrneu5 | 111 | 173 | 1.8E-5 | IPR002867 |
| SMART | SM00647 | ibrneu5 | 184 | 238 | 0.33 | IPR002867 |
| SMART | SM00645 | pept_c1 | 336 | 569 | 5.3E-10 | IPR000668 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 40 | 88 | 9.671455 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 36 | 251 | 21.915756 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 60 | 69 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 33 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G39090.1 | Papain family cysteine protease. Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Required for RRS1-R mediated resistance against Ralstonia solanacearum. Interacts with the R. solanacearum type III effector PopP2. RD19 associates with PopP2 to form a nuclear complex that is required for activation of the RRS1-Rmediated resistance response. | 0 |
| RefSeq | XP_011092829.1 | E3 ubiquitin-protein ligase RNF144B-like isoform X1 [Sesamum indicum] | 0 |
| P43296 | Cysteine protease RD19A OS=Arabidopsis thaliana OX=3702 GN=RD19A PE=1 SV=1 | 0 | |
| TrEMBL | A0A4S4EJG4 | RING-type domain-containing protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_006577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology