Basic Information
Locus ID:
jg26140
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr29 | 314221 | 322715 | - | jg26140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.33 | 172,439.14 Da | 49.62 | 88.22 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1173 | 1591 | 2.86488E-117 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1270 | 1596 | 6.7E-76 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1166 | 1589 | 4.84E-93 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 2 | 366 | 8.81E-24 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 250 | 369 | 2.3E-5 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1468 | 1594 | 9.0E-32 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 1 | 211 | 2.9E-24 | IPR011989 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1112 | 1360 | 7.3E-44 | - |
| SMART | SM00119 | hect_3 | 1184 | 1596 | 2.2E-75 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1197 | 1596 | 54.878281 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 229 | 249 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 391 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 981 | 1004 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 402 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 838 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 732 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 376 | 417 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 845 | 873 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 764 | 788 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_051145635.1 | E3 ubiquitin-protein ligase UPL3 [Andrographis paniculata] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GHT1 | HECT-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_22608 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology