Basic Information
Locus ID:
jg25953
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Raffinose synthase or seed imbibition protein Sip1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 10970315 | 10974801 | + | jg25953 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 94,702.88 Da | 46.72 | 83.42 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 127 | 478 | 2.1E-105 | IPR008811 |
| Pfam | PF05691 | Raffinose synthase or seed imbibition protein Sip1 | 480 | 840 | 4.1E-131 | IPR008811 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 323 | 624 | 4.21E-44 | IPR017853 |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 325 | 612 | 1.7E-9 | IPR013785 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G57520.1 | seed imbibition 2. | 0 |
| RefSeq | XP_011071998.1 | probable galactinol--sucrose galactosyltransferase 2 [Sesamum indicum] | 0 |
| Q94A08 | Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana OX=3702 GN=RFS2 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SPD6 | galactinol--sucrose galactosyltransferase OS=Sesamum indicum OX=4182 GN=LOC105157307 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology