Basic Information
Locus ID:
jg25798
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 9714820 | 9715158 | - | jg25798 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.05 | 12,293.89 Da | 42.13 | 83.66 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 61 | 104 | 1.7E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 61 | 107 | 7.85E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 108 | 7.9E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 62 | 103 | 5.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 62 | 104 | 11.707369 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_017256572.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHG1A [Daucus carota subsp. sativus] | 0 |
| TrEMBL | A0A2G9GUS0 | RING-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_18438 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||