Basic Information
Locus ID:
jg25796
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 9679161 | 9680010 | - | jg25796 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 29,490.19 Da | 63.68 | 71.76 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 214 | 256 | 1.6E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 213 | 258 | 8.64E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 189 | 259 | 2.3E-15 | IPR013083 |
| SMART | SM00184 | ring_2 | 214 | 255 | 8.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 214 | 256 | 11.987676 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34040.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011074236.1 | uncharacterized protein LOC105159002 [Sesamum indicum] | 0 |
| O49500 | E3 ubiquitin-protein ligase MBR2 OS=Arabidopsis thaliana OX=3702 GN=MBR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SVE5 | uncharacterized protein LOC105159002 OS=Sesamum indicum OX=4182 GN=LOC105159002 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||