Basic Information
Locus ID:
jg25789
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Hemerythrin HHE cation binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 9618634 | 9628854 | - | jg25789 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.15 | 130,464.80 Da | 46.85 | 83.92 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 30 | 156 | 1.49881E-20 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1002 | 1045 | 1.62767E-18 | - |
| CDD | cd12108 | Hr-like | 474 | 614 | 3.82024E-19 | - |
| Pfam | PF14599 | Zinc-ribbon | 1050 | 1107 | 2.2E-23 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 874 | 949 | 1.9E-17 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 1002 | 1044 | 4.0E-8 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 29 | 158 | 9.8E-9 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1002 | 1051 | 1.98E-8 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 940 | 994 | 1.57E-15 | IPR037275 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 864 | 930 | 2.09E-18 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 996 | 1047 | 3.5E-10 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1074 | 1112 | 5.9E-16 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 25 | 176 | 1.8E-20 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 466 | 649 | 2.1E-13 | - |
| SMART | SM00184 | ring_2 | 1003 | 1044 | 1.0E-6 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 867 | 936 | 23.306208 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1003 | 1045 | 11.604098 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 939 | 1002 | 28.425884 | IPR017921 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_051136609.1 | zinc finger protein BRUTUS-like At1g74770 [Andrographis paniculata] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SP10 | zinc finger protein BRUTUS-like At1g18910 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105157125 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology