Basic Information
Locus ID:
jg25510
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the short-chain dehydrogenases reductases (SDR) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 3284362 | 3296479 | - | jg25510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 72,072.82 Da | 39.75 | 93.37 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00106 | short chain dehydrogenase | 34 | 173 | 3.9E-28 | IPR002347 |
| SUPERFAMILY | SSF51735 | NAD(P)-binding Rossmann-fold domains | 32 | 290 | 1.06E-48 | IPR036291 |
| Gene3D | G3DSA:3.40.50.720 | - | 29 | 299 | 6.6E-66 | - |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 228 | 247 | 3.2E-7 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 161 | 169 | 3.2E-7 | IPR002347 |
| PRINTS | PR00080 | Short-chain dehydrogenase/reductase (SDR) superfamily signature | 108 | 119 | 3.2E-7 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 228 | 247 | 4.3E-14 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 108 | 119 | 4.3E-14 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 34 | 51 | 4.3E-14 | IPR002347 |
| PRINTS | PR00081 | Glucose/ribitol dehydrogenase family signature | 253 | 270 | 4.3E-14 | IPR002347 |
| Coils | Coil | Coil | 182 | 202 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
ko00590 (Arachidonic acid metabolism)
map00590 (Arachidonic acid metabolism)
ko00790 (Folate biosynthesis)
map00790 (Folate biosynthesis)
ko00980 (Metabolism of xenobiotics by cytochrome P450)
map00980 (Metabolism of xenobiotics by cytochrome P450)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
Reaction:
R02581 (Prostaglandin F2alpha + NADP+ <=> Prostaglandin E2 + NADPH + H+)
R02975 (7,8-Dihydrobiopterin + NADP+ <=> Sepiapterin + NADPH + H+)
R04285 (6-Lactoyl-5,6,7,8-tetrahydropterin + NADP+ <=> 6-Pyruvoyltetrahydropterin + NADPH + H+)
R09420 (4-(N-Nitrosomethylamino)-1-(3-pyridyl)-1-butanone + NADPH + H+ <=> 4-(Methylnitrosamino)-1-(3-pyridyl)-1-butanol + NADP+)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51030.1 | NAD(P)-binding Rossmann-fold superfamily protein. | 0 |
| RefSeq | XP_011073283.1 | carbonyl reductase [NADPH] 1 [Sesamum indicum] | 0 |
| Q67YC9 | Uncharacterized protein At4g14100 OS=Arabidopsis thaliana OX=3702 GN=At4g14100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3Q7GX38 | (+)-neomenthol dehydrogenase-like OS=Solanum lycopersicum OX=4081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25510, jg34435 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_17969 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah014038, Ah014039 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g149590 |
| Amaranthaceae | Salicornia bigelovii | 4 | Sbi_jg42623, Sbi_jg42626, Sbi_jg45246, Sbi_jg45249 |
| Amaranthaceae | Salicornia europaea | 2 | Seu_jg26919, Seu_jg26922 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002664 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl35463, Sgl35465, Sgl40875, Sgl40876 |
| Amaranthaceae | Chenopodium album | 7 | gene:ENSEOMG00000001099, gene:ENSEOMG00000003721 ... |
| Amaranthaceae | Chenopodium quinoa | 4 | CQ.Regalona.r1.6AG0001900, CQ.Regalona.r1.6AG0001910 ... |
| Anacardiaceae | Pistacia vera | 3 | pistato.v30012710, pistato.v30167670, pistato.v30241950 |
| Apiaceae | Apium graveolens | 4 | Ag4G00034, Ag4G00035, Ag5G00216, Ag5G02336 |
| Arecaceae | Cocos nucifera | 3 | COCNU_02G015880, scaffold014119G000020 ... |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712387, gene-LOC120112197 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1511.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri7G21315, Ftri9G32351 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G23760.1, AT4G14100.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10002677m.g.v1.0, Thhalv10026167m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 2 | Sp3g21470.v2.2, Sp7g11890.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g037850.2N, BniB04g051450.2N |
| Casuarinaceae | Casuarina equisetifolia | 3 | Ceq01G1924, Ceq03G1197, Ceq05G0598 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl03G1302, Cgl05G0620, Cgl07G0966 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g02060 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0327s00012.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g26340 |
| Nitrariaceae | Nitraria sibirica | 4 | evm.TU.LG02.963, evm.TU.LG02.964, evm.TU.LG05.543 ... |
| Plantaginaceae | Plantago ovata | 2 | Pov_00019496, Pov_00020062 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb6G30264 |
| Poaceae | Echinochloa crus-galli | 12 | AH01.588, AH03.2958, AH03.472, BH03.3131, BH03.578, BH03.579 ... |
| Poaceae | Eleusine coracana subsp. coracana | 5 | gene-QOZ80_3AG0208270, gene-QOZ80_3BG0253280 ... |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0232360.1, HORVU.MOREX.r3.5HG0534340.1 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_001848, gene-QYE76_041385, gene-QYE76_041405 ... |
| Poaceae | Oryza coarctata | 8 | Oco06G030000, Oco13G003010, Oco13G007080, Oco14G003280 ... |
| Poaceae | Oryza sativa | 6 | LOC_Os03g63380.1, LOC_Os07g09140.1, LOC_Os07g09150.1 ... |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G010000, gene-BS78_02G064200 ... |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0107964, Pt_Chr0107972, Pt_Chr0303757, Pt_Chr0306617 |
| Poaceae | Sporobolus alterniflorus | 7 | Chr14G003920, Chr19G016770, Chr19G016780, Chr19G016790 ... |
| Poaceae | Thinopyrum elongatum | 4 | Tel3E01G151100, Tel3E01G151300, Tel5E01G843800 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC3BG013840, gene_TRIDC4AG050400 ... |
| Poaceae | Triticum aestivum | 11 | TraesCS3A02G084900.1, TraesCS3B02G099800.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb064550_P001, Zm00001eb302350_P002 ... |
| Poaceae | Zoysia japonica | 7 | nbis-gene-1078, nbis-gene-15658, nbis-gene-26744 ... |
| Poaceae | Zoysia macrostachya | 5 | Zma_g55, Zma_g6131, Zma_g6132, Zma_g6133, Zma_g6411 |
| Portulacaceae | Portulaca oleracea | 6 | evm.TU.LG10.379, evm.TU.LG10.381, evm.TU.LG17.377 ... |
| Posidoniaceae | Posidonia oceanica | 4 | gene.Posoc01g04540, gene.Posoc01g04550, gene.Posoc05g14620 ... |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_15_RagTag.940 |
| Rhizophoraceae | Carallia pectinifolia | 3 | nbisL1-mrna-13337, nbisL1-mrna-27123, nbisL1-mrna-27309 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000001l.528 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00002586 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-11125, nbisL1-mrna-16615 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-17601 |
| Salicaceae | Populus euphratica | 4 | populus_peu03898, populus_peu05487, populus_peu05492 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132625799, gene-LOC132633139 |
| Solanaceae | Solanum chilense | 3 | SOLCI000879200, SOLCI003466500, SOLCI006355700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107011408, gene-LOC107014800, gene-LOC107023670 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.23035_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3704 |
| Zosteraceae | Zostera marina | 1 | Zosma01g25750.v3.1 |