Basic Information
Locus ID:
jg25438
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 2486734 | 2494685 | - | jg25438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.83 | 123,976.33 Da | 41.78 | 80.89 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 457 | 491 | 9.8E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 911 | 945 | 0.0068 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 832 | 1092 | 1.1E-33 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 352 | 667 | 6.87E-38 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 516 | 689 | 1.6E-10 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 729 | 958 | 1.3E-23 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 321 | 515 | 3.7E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 959 | 1103 | 3.8E-5 | IPR015943 |
| SMART | SM00320 | WD40_4 | 538 | 581 | 180.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 450 | 491 | 0.0012 | IPR001680 |
| SMART | SM00320 | WD40_4 | 404 | 444 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 344 | 383 | 2.2 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 2.0E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 997 | 1038 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 825 | 860 | 200.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 863 | 903 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 584 | 624 | 15.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 6.7E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 494 | 535 | 0.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 906 | 945 | 5.0E-6 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 457 | 500 | 10.608706 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 913 | 947 | 12.379869 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 913 | 947 | 10.311051 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.438382 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.369186 | IPR006594 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 478 | 492 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1101 | 1125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1125 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15880.2 | WUS-interacting protein 2. | 0 |
| RefSeq | XP_011073420.1 | topless-related protein 4 [Sesamum indicum] | 0 |
| Q27GK7 | Topless-related protein 4 OS=Arabidopsis thaliana OX=3702 GN=TPR4 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9SSG3 | topless-related protein 4 OS=Sesamum indicum OX=4182 GN=LOC105158374 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology