Basic Information
Locus ID:
jg25406
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
protein UNUSUAL FLORAL
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 2246895 | 2248004 | + | jg25406 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 40,420.20 Da | 39.87 | 87.45 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12937 | F-box-like | 2 | 39 | 1.4E-9 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 69 | 6.8E-14 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 60 | 265 | 1.31E-15 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 62 | 287 | 2.3E-13 | IPR015915 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 41 | 6.4E-12 | - |
| SMART | SM00256 | fbox_2 | 5 | 45 | 1.6E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 34 | 9.974368 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011072240.1 | F-box only protein 6 [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9HQF5 | F-box domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_07794 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25406, jg25407 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127810 |
| Apiaceae | Apium graveolens | 1 | Ag5G00134 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G15398 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-732 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.450 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00027755 |
| Salicaceae | Populus euphratica | 1 | populus_peu33748 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132632975 |
| Solanaceae | Solanum chilense | 1 | SOLCI004631100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107012683 |