Basic Information
Locus ID:
jg25375
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box kelch-repeat protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 1940811 | 1942640 | - | jg25375 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 55,309.75 Da | 50.98 | 77.64 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01344 | Kelch motif | 304 | 337 | 8.0E-8 | IPR006652 |
| Pfam | PF13964 | Kelch motif | 242 | 289 | 3.8E-7 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 73 | 112 | 7.98E-5 | IPR036047 |
| SUPERFAMILY | SSF117281 | Kelch motif | 216 | 473 | 3.53E-38 | IPR015915 |
| Gene3D | G3DSA:2.120.10.80 | - | 206 | 482 | 9.9E-35 | IPR015915 |
| SMART | SM00612 | kelc_smart | 304 | 351 | 0.024 | IPR006652 |
| SMART | SM00612 | kelc_smart | 253 | 301 | 0.071 | IPR006652 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G15670.1 | Galactose oxidase/kelch repeat superfamily protein. | 0 |
| RefSeq | XP_011072289.1 | F-box/kelch-repeat protein At1g80440-like [Sesamum indicum] | 0 |
| Q9LMR5 | F-box/kelch-repeat protein At1g15670 OS=Arabidopsis thaliana OX=3702 GN=At1g15670 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9SQC2 | F-box/kelch-repeat protein At1g80440-like OS=Sesamum indicum OX=4182 GN=LOC105157577 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology