Basic Information
Locus ID:
jg25284
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PolyA polymerase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 1308175 | 1312686 | + | jg25284 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.46 | 70,196.37 Da | 53.97 | 80.19 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 67 | 222 | 1.14442E-27 | - |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 375 | 433 | 2.9E-10 | IPR007010 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 98 | 177 | 1.2E-8 | IPR002934 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 28 | 372 | 8.4E-104 | IPR007012 |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 375 | 501 | 1.53E-31 | IPR011068 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 223 | 372 | 1.07E-60 | - |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 27 | 221 | 1.25E-49 | IPR043519 |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 60 | 216 | 1.8E-150 | IPR043519 |
| Gene3D | G3DSA:1.10.1410.10 | - | 28 | 370 | 1.8E-150 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 375 | 490 | 9.0E-24 | - |
| PIRSF | PIRSF018425 | PolyA_polymerase | 15 | 597 | 4.3E-211 | IPR014492 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 0 |
| RefSeq | XP_011072440.1 | nuclear poly(A) polymerase 4-like isoform X1 [Sesamum indicum] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SQC3 | polynucleotide adenylyltransferase OS=Sesamum indicum OX=4182 GN=LOC105157694 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology