Basic Information
Locus ID:
jg25242
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 1089347 | 1090629 | + | jg25242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.88 | 13,684.76 Da | 38.32 | 95.16 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00270 | DEAD/DEAH box helicase | 47 | 120 | 1.0E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 5 | 121 | 3.55E-29 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 124 | 2.1E-36 | IPR027417 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 53 | 124 | 11.106386 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 22 | 50 | 9.657484 | IPR014014 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55150.1 | DEA(D/H)-box RNA helicase family protein. | 0 |
| RefSeq | XP_011072507.1 | DEAD-box ATP-dependent RNA helicase 20 [Sesamum indicum] | 0 |
| Q5QMN3 | DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0197200 PE=3 SV=2 | 0 | |
| TrEMBL | A0A6I9SQV0 | DEAD-box ATP-dependent RNA helicase 20 OS=Sesamum indicum OX=4182 GN=LOC105157744 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology