Basic Information
Locus ID:
jg25172
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 570016 | 575491 | - | jg25172 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.66 | 46,045.17 Da | 52.94 | 68.79 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 141 | 215 | 5.29246E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 57 | 127 | 9.66293E-37 | - |
| CDD | cd12354 | RRM3_TIA1_like | 261 | 336 | 4.9969E-33 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 142 | 212 | 8.6E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 263 | 328 | 2.4E-10 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 57 | 123 | 6.9E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 134 | 222 | 4.84E-27 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 39 | 133 | 7.66E-24 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 253 | 344 | 9.91E-20 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 239 | 340 | 1.8E-20 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 135 | 2.3E-24 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 136 | 238 | 1.2E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 262 | 332 | 1.6E-15 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 141 | 214 | 5.5E-24 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 56 | 125 | 7.1E-17 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 140 | 218 | 17.131182 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 55 | 129 | 15.255088 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 261 | 336 | 14.521706 | IPR000504 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 245 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_011072608.1 | oligouridylate-binding protein 1B-like [Sesamum indicum] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GWG7 | Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_17856 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology