Basic Information
Locus ID:
jg25151
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein present in Fab1, YOTB, Vac1, and EEA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr26 | 402310 | 411977 | - | jg25151 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.70 | 201,145.27 Da | 48.94 | 78.24 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15725 | FYVE_PIKfyve_Fab1 | 32 | 99 | 3.21175E-30 | - |
| CDD | cd03334 | Fab1_TCP | 380 | 652 | 1.75289E-132 | - |
| CDD | cd17300 | PIPKc_PIKfyve | 1515 | 1778 | 2.06872E-145 | IPR044769 |
| Pfam | PF00118 | TCP-1/cpn60 chaperonin family | 400 | 646 | 4.7E-33 | IPR002423 |
| Pfam | PF01504 | Phosphatidylinositol-4-phosphate 5-Kinase | 1554 | 1720 | 6.4E-32 | IPR002498 |
| Pfam | PF01363 | FYVE zinc finger | 33 | 101 | 1.8E-17 | IPR000306 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 32 | 103 | 3.65E-19 | IPR011011 |
| SUPERFAMILY | SSF52029 | GroEL apical domain-like | 446 | 618 | 6.54E-42 | IPR027409 |
| SUPERFAMILY | SSF56104 | SAICAR synthase-like | 1497 | 1778 | 3.92E-80 | - |
| Gene3D | G3DSA:3.30.810.10 | - | 1638 | 1779 | 4.2E-41 | - |
| Gene3D | G3DSA:3.50.7.10 | GroEL | 445 | 618 | 8.8E-53 | IPR027409 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 24 | 108 | 8.4E-22 | IPR013083 |
| Gene3D | G3DSA:3.30.800.10 | Phosphatidylinositol Phosphate Kinase II Beta | 1476 | 1635 | 2.2E-36 | IPR027484 |
| SMART | SM00064 | fyve_4 | 28 | 103 | 8.5E-22 | IPR000306 |
| SMART | SM00330 | PIPK_2 | 1488 | 1779 | 6.9E-123 | IPR002498 |
| ProSiteProfiles | PS50178 | Zinc finger FYVE/FYVE-related type profile. | 36 | 102 | 13.399007 | IPR017455 |
| ProSiteProfiles | PS51455 | Phosphatidylinositol phosphate kinase (PIPK) domain profile. | 1454 | 1778 | 57.473862 | IPR002498 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 367 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1162 | 1216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1185 | 1216 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 344 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1791 | 1814 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14270.1 | phosphatidylinositol-4-phosphate 5-kinase family protein. Encodes a protein that is predicted to act as a 1-phosphatidylinositol-3-phosphate (PtdIns3P) 5-kinase based on its homology to Fab1 from yeast. It contains an FYVE domain required for binding to PtdIns3P-containing membranes in yeast, as well as a Cpn60_TCP1 homology domain plus a kinase domain. fab1a/fab1b pollen grains not viable and have defective vacuolar organization. | 0 |
| RefSeq | XP_011072684.1 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B isoform X1 [Sesamum indicum] | 0 |
| Q9LUM0 | 1-phosphatidylinositol-3-phosphate 5-kinase FAB1B OS=Arabidopsis thaliana OX=3702 GN=FAB1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SY92 | 1-phosphatidylinositol-3-phosphate 5-kinase OS=Sesamum indicum OX=4182 GN=LOC105157878 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology