Basic Information
Locus ID:
jg2505
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 3763445 | 3763798 | - | jg2505 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 13,139.91 Da | 18.04 | 80.86 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_044462454.1 | uncharacterized protein LOC123193497 [Mangifera indica] | 0 |
| TrEMBL | A0A2G9GC37 | Transmembrane protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg2505 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_2_RagTag.551 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-4646 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-2095 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-9639 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17777 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-16628, nbisL1-mrna-16629 |