Basic Information
Locus ID:
jg25025
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ubiquitin homologues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 11702264 | 11703497 | - | jg25025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.87 | 22,236.43 Da | 44.73 | 89.75 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 34 | 84 | 2.9E-7 | IPR000626 |
| Pfam | PF02179 | BAG domain | 89 | 165 | 1.5E-6 | IPR003103 |
| SUPERFAMILY | SSF63491 | BAG domain | 81 | 166 | 8.01E-10 | IPR036533 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 16 | 84 | 7.6E-11 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 24 | 86 | 2.0E-15 | - |
| Gene3D | G3DSA:1.20.58.120 | BAG domain | 87 | 172 | 3.2E-22 | IPR036533 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 43 | 83 | 10.46229 | IPR000626 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G14360.1 | Ubiquitin-like superfamily protein. | 0 |
| RefSeq | XP_011085223.1 | BAG family molecular chaperone regulator 2 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TLJ2 | BAG family molecular chaperone regulator 2 OS=Sesamum indicum OX=4182 GN=LOC105167276 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg25025, jg38766 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30075900 |
| Arecaceae | Cocos nucifera | 2 | scaffold000682G000020, scaffold001635G000020 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103716262 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_01.1749.V1.1, AsparagusV1_07.3448.V1.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0110 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0168 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g02470 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate07g01760 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.148 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00013080 |
| Poaceae | Echinochloa crus-galli | 3 | AH09.2324, BH09.2522, CH09.2759 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_4AG0303610, gene-QOZ80_4BG0334500 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0195140.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046339 |
| Poaceae | Oryza coarctata | 2 | Oco07G016190, Oco08G015690 |
| Poaceae | Oryza sativa | 1 | LOC_Os04g52890.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G232200 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0301131 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr23G004600, Chr25G002920, Chr26G015830, Chr30G002870 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G784300 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG065860, gene_TRIDC2BG070930 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G463500.1, TraesCS2B02G485500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb070410_P002 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17587, nbis-gene-22896 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g20469 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc08g07400, gene.Posoc10g05070 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_14_RagTag.942 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-16714, nbisL1-mrna-16790 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-19165, nbisL1-mrna-2120 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-17248 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000025l.114 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00012355 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-8651 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9164 |
| Salicaceae | Populus euphratica | 1 | populus_peu00931 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611459 |
| Tamaricaceae | Tamarix chinensis | 2 | TC06G1107, TC06G1568 |