Basic Information
Locus ID:
jg24968
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 11339048 | 11342566 | + | jg24968 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.22 | 24,142.86 Da | 45.67 | 78.50 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 73 | 126 | 1.6637E-11 | - |
| Pfam | PF12906 | RING-variant domain | 73 | 125 | 6.4E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 68 | 128 | 9.89E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 59 | 136 | 9.4E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 72 | 126 | 4.3E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 65 | 132 | 17.384737 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 30 | 47 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 47 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_051133648.1 | uncharacterized protein LOC127253234 [Andrographis paniculata] | 0 |
| TrEMBL | A0A022RU94 | RING-CH-type domain-containing protein OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a014070mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology