Basic Information
Locus ID:
jg24923
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 11069745 | 11073189 | + | jg24923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 98,649.05 Da | 34.89 | 102.99 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 737 | 865 | 7.2E-11 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 504 | 563 | 1.2E-7 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 26 | 65 | 2.9E-9 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 142 | 201 | 6.9E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 49 | 311 | 4.59E-50 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 222 | 582 | 3.14E-55 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 685 | 876 | 3.23E-27 | IPR011009 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 185 | 268 | 2.7E-20 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 25 | 184 | 1.0E-40 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 269 | 617 | 1.6E-94 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 724 | 893 | 2.6E-33 | - |
| SMART | SM00220 | serkin_6 | 688 | 853 | 1.1E-4 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 553 | 870 | 11.919923 | IPR000719 |
| ProSiteProfiles | PS51450 | Leucine-rich repeat profile. | 575 | 597 | 7.1113 | IPR001611 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 694 | 717 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 872 | 900 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G28440.1 | HAESA-like 1. | 0 |
| RefSeq | XP_011096363.1 | receptor-like protein kinase HSL1 [Sesamum indicum] | 0 |
| Q9SGP2 | Receptor-like protein kinase HSL1 OS=Arabidopsis thaliana OX=3702 GN=HSL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U9W6 | receptor-like protein kinase HSL1 OS=Sesamum indicum OX=4182 GN=LOC105175577 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology