Basic Information
Locus ID:
jg24878
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 10774096 | 10776504 | - | jg24878 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 29,056.88 Da | 51.26 | 64.29 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 72 | 122 | 8.35566E-23 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 74 | 120 | 1.0E-9 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 68 | 133 | 6.41E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 44 | 146 | 1.4E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 74 | 120 | 9.3E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 74 | 121 | 12.208971 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 89 | 98 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 62 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27470.1 | RING membrane-anchor 3. Encodes a RING finger E3 ubiquitin ligase. | 0 |
| RefSeq | XP_011096301.1 | E3 ubiquitin-protein ligase RMA1H1-like [Sesamum indicum] | 0 |
| Q6R567 | E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum OX=4072 GN=RMA1H1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UED4 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105175535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology