Basic Information
Locus ID:
jg24867
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 10703833 | 10712297 | - | jg24867 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 126,252.38 Da | 53.13 | 78.76 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18008 | DEXDc_SHPRH-like | 438 | 765 | 1.85154E-85 | - |
| CDD | cd18793 | SF2_C_SNF | 971 | 1096 | 1.772E-40 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1013 | 1086 | 1.8E-10 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 458 | 842 | 2.6E-66 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 881 | 917 | 4.0E-5 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 425 | 765 | 1.83E-44 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 878 | 933 | 3.31E-9 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 773 | 1143 | 2.6E-46 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 408 | 500 | 1.9E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 634 | 766 | 7.6E-29 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 529 | 626 | 1.5E-10 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 874 | 933 | 2.2E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 780 | 1144 | 1.6E-49 | IPR027417 |
| SMART | SM00490 | helicmild6 | 997 | 1086 | 2.3E-14 | IPR001650 |
| SMART | SM00184 | ring_2 | 881 | 919 | 7.1E-5 | IPR001841 |
| SMART | SM00487 | ultradead3 | 434 | 744 | 2.2E-27 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 881 | 920 | 10.615647 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 453 | 727 | 12.351292 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 973 | 1139 | 12.859206 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 896 | 905 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 656 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 614 | 658 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_051135086.1 | helicase-like transcription factor CHR28 [Andrographis paniculata] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TKY4 | helicase-like transcription factor CHR28 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105167916 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology