Basic Information
Locus ID:
jg24860
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Double-stranded RNA binding motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 10625168 | 10634973 | - | jg24860 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 106,966.80 Da | 57.37 | 80.84 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 243 | 359 | 1.42765E-19 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 838 | 900 | 2.6E-5 | IPR014720 |
| Pfam | PF00035 | Double-stranded RNA binding motif | 729 | 765 | 2.0E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 248 | 359 | 1.3E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 835 | 913 | 1.51E-11 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 697 | 765 | 4.13E-10 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 132 | 385 | 9.79E-21 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 693 | 768 | 1.3E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 130 | 395 | 1.8E-25 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 830 | 909 | 2.3E-7 | - |
| SMART | SM00577 | forpap2 | 192 | 368 | 3.5E-16 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 837 | 904 | 4.2E-6 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 702 | 766 | 2.9E-6 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 133 | 381 | 15.809887 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 836 | 905 | 12.183867 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 701 | 767 | 11.334196 | IPR014720 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 527 | 546 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 954 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 801 | 834 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 912 | 954 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_011086104.1 | RNA polymerase II C-terminal domain phosphatase-like 1 [Sesamum indicum] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TJW1 | protein-serine/threonine phosphatase OS=Sesamum indicum OX=4182 GN=LOC105167922 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology