Basic Information
Locus ID:
jg24850
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
A Receptor for Ubiquitination Targets
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 10562952 | 10566824 | - | jg24850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.20 | 57,297.66 Da | 47.46 | 90.59 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 26 | 66 | 2.8E-19 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 85 | 131 | 2.4E-18 | IPR041101 |
| SUPERFAMILY | SSF52047 | RNI-like | 106 | 466 | 9.68E-33 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 26 | 77 | 6.67E-5 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 25 | 64 | 4.9E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 66 | 501 | 7.1E-130 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 123 | 147 | 33.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 380 | 403 | 91.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 148 | 173 | 29.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 429 | 453 | 51.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 262 | 285 | 260.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 404 | 428 | 410.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 320 | 344 | 7.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_011086127.1 | protein TRANSPORT INHIBITOR RESPONSE 1-like [Sesamum indicum] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9TXE4 | protein TRANSPORT INHIBITOR RESPONSE 1-like OS=Sesamum indicum OX=4182 GN=LOC105167936 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology