Basic Information
Locus ID:
jg24784
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
chitin elicitor receptor kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 10054121 | 10067540 | - | jg24784 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 65,400.77 Da | 34.99 | 85.69 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 310 | 569 | 1.00224E-86 | - |
| Pfam | PF01476 | LysM domain | 153 | 180 | 0.082 | IPR018392 |
| Pfam | PF01476 | LysM domain | 28 | 68 | 5.0E-5 | IPR018392 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 305 | 570 | 1.3E-44 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 286 | 572 | 2.7E-75 | IPR011009 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 16 | 73 | 6.9E-7 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 276 | 374 | 4.4E-27 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 375 | 583 | 4.9E-54 | - |
| SMART | SM00257 | LysM_2 | 149 | 191 | 13.0 | IPR018392 |
| SMART | SM00220 | serkin_6 | 304 | 574 | 1.4E-37 | IPR000719 |
| SMART | SM00257 | LysM_2 | 23 | 68 | 8.7E-4 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 304 | 575 | 38.364635 | IPR000719 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 22 | 67 | 10.057201 | IPR018392 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 417 | 429 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 310 | 332 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 197 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 223 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G21630.1 | chitin elicitor receptor kinase 1. LysM receptor-like kinase. Essential in the perception and transduction of the chitin oligosaccharide elicitor. Involved in chitin-mediated plant innate immunity. Located in the plasma membrane. | 0 |
| RefSeq | XP_020551789.1 | lysM domain receptor-like kinase 3 isoform X4 [Sesamum indicum] | 0 |
| Q6UD73 | LysM domain receptor-like kinase 3 OS=Medicago truncatula OX=3880 GN=LYK3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8V617 | lysM domain receptor-like kinase 3 isoform X4 OS=Sesamum indicum OX=4182 GN=LOC105168606 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology