Basic Information
Locus ID:
jg24655
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 8977284 | 8980370 | + | jg24655 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 34,759.90 Da | 46.07 | 71.64 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 29 | 114 | 5.32121E-47 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 231 | 294 | 1.62899E-18 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 32 | 114 | 9.8E-18 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 231 | 298 | 1.3E-12 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 217 | 300 | 1.57E-18 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 27 | 128 | 4.84E-31 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 17 | 134 | 1.3E-30 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 229 | 305 | 5.5E-17 | IPR036910 |
| SMART | SM00501 | bright_3 | 28 | 119 | 1.6E-32 | IPR001606 |
| SMART | SM00398 | hmgende2 | 230 | 299 | 1.2E-14 | IPR009071 |
| SMART | SM01014 | ARID_2 | 24 | 114 | 8.1E-29 | - |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 231 | 298 | 14.463983 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 27 | 118 | 27.249598 | IPR001606 |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 282 | 302 | 8.6E-5 | - |
| PRINTS | PR00886 | High mobility group (HMG1/HMG2) protein signature | 263 | 282 | 8.6E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_012841669.1 | PREDICTED: high mobility group B protein 10 [Erythranthe guttata] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9I5T6 | HMG box-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02144 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology