Basic Information
Locus ID:
jg24609
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 8587315 | 8588529 | + | jg24609 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 42,819.19 Da | 47.44 | 90.42 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 38 | 108 | 1.1E-4 | IPR000782 |
| Pfam | PF02469 | Fasciclin domain | 202 | 329 | 6.6E-12 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 33 | 176 | 2.22E-16 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 184 | 330 | 7.72E-18 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 26 | 176 | 5.5E-8 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 191 | 330 | 4.6E-9 | IPR036378 |
| SMART | SM00554 | fasc_3 | 63 | 178 | 2.6 | IPR000782 |
| SMART | SM00554 | fasc_3 | 226 | 330 | 3.1E-18 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 27 | 175 | 11.024975 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 188 | 327 | 10.565905 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 379 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 337 | 364 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55730.1 | FASCICLIN-like arabinogalactan 1. fasciclin-like arabinogalactan-protein 1 (Fla1) | 0 |
| RefSeq | XP_011097758.1 | fasciclin-like arabinogalactan protein 1 [Sesamum indicum] | 0 |
| Q9FM65 | Fasciclin-like arabinogalactan protein 1 OS=Arabidopsis thaliana OX=3702 GN=FLA1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UI48 | fasciclin-like arabinogalactan protein 1 OS=Sesamum indicum OX=4182 GN=LOC105176595 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology