Basic Information
Locus ID:
jg24582
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 8350223 | 8356768 | + | jg24582 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 90,317.07 Da | 39.56 | 93.33 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 109 | 407 | 3.59446E-165 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 426 | 725 | 5.21822E-156 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 432 | 720 | 2.1E-22 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 116 | 403 | 2.9E-5 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 109 | 407 | 1.23E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 432 | 726 | 5.76E-36 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 425 | 725 | 2.3E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 107 | 408 | 1.2E-34 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 109 | 409 | 32.201942 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 425 | 726 | 33.988365 | IPR030395 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 777 | 791 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_011097815.1 | glycerophosphodiester phosphodiesterase GDPDL3 [Sesamum indicum] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | A0A6I9U9Y7 | glycerophosphodiester phosphodiesterase OS=Sesamum indicum OX=4182 GN=LOC105176644 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology