Basic Information
Locus ID:
jg24566
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Small ubiquitin-related modifier 2
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 8203179 | 8204977 | - | jg24566 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.91 | 10,845.92 Da | 47.91 | 63.02 | -0.80 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16116 | Ubl_Smt3_like | 16 | 88 | 1.33364E-48 | - |
| Pfam | PF11976 | Ubiquitin-2 like Rad60 SUMO-like | 17 | 87 | 1.6E-25 | IPR022617 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 4 | 92 | 2.89E-28 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 92 | 6.2E-40 | - |
| SMART | SM00213 | ubq_7 | 17 | 88 | 2.1E-13 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 15 | 92 | 16.232769 | IPR000626 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26840.1 | small ubiquitin-like modifier 1. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. | 0 |
| RefSeq | XP_011097841.1 | small ubiquitin-related modifier 1-like [Sesamum indicum] | 0 |
| P55852 | Small ubiquitin-related modifier 1 OS=Arabidopsis thaliana OX=3702 GN=SUMO1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9UGZ2 | Small ubiquitin-related modifier OS=Sesamum indicum OX=4182 GN=LOC105176665 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology