Basic Information
Locus ID:
jg24371
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Receptor homology region transmembrane domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 3275593 | 3278405 | + | jg24371 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 30,600.94 Da | 40.23 | 98.55 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02123 | PA_C_RZF_like | 26 | 154 | 1.63657E-39 | IPR044744 |
| Pfam | PF13639 | Ring finger domain | 221 | 264 | 9.3E-11 | IPR001841 |
| Pfam | PF02225 | PA domain | 58 | 138 | 5.6E-11 | IPR003137 |
| SUPERFAMILY | SSF52025 | PA domain | 76 | 140 | 4.58E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 200 | 270 | 9.51E-18 | - |
| Gene3D | G3DSA:3.50.30.30 | - | 19 | 148 | 4.3E-25 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 181 | 270 | 7.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 222 | 263 | 5.3E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 222 | 264 | 12.636808 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_051135065.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1 isoform X2 [Andrographis paniculata] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GJL3 | Putative E3 ubiquitin ligase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21981 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology