Basic Information
Locus ID:
jg24367
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 3205518 | 3207239 | - | jg24367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 22,676.54 Da | 51.77 | 70.38 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 93 | 141 | 8.07348E-12 | - |
| Pfam | PF12906 | RING-variant domain | 93 | 140 | 3.7E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 144 | 6.0E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 152 | 2.7E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 92 | 141 | 9.5E-11 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 85 | 147 | 19.038816 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 9 | 23 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G34200.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_011098376.1 | E3 ubiquitin-protein ligase MARCH3-like [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9GJL0 | RING-CH-type domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21987 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology