Basic Information
Locus ID:
jg24101
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat-containing protein 26-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr24 | 112717 | 118325 | - | jg24101 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 65,054.29 Da | 38.72 | 92.05 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 270 | 556 | 1.37291E-45 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 519 | 556 | 2.8E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 262 | 298 | 6.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 344 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 349 | 386 | 0.21 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 513 | 0.0094 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 259 | 556 | 1.19E-62 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 235 | 437 | 3.7E-35 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 438 | 576 | 9.4E-26 | IPR015943 |
| SMART | SM00668 | ctlh | 95 | 152 | 2.4E-5 | IPR006595 |
| SMART | SM00320 | WD40_4 | 472 | 514 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 388 | 428 | 14.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 517 | 557 | 1.7E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 305 | 344 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 430 | 468 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 347 | 386 | 0.075 | IPR001680 |
| SMART | SM00320 | WD40_4 | 260 | 299 | 1.7E-7 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 95 | 152 | 10.121841 | IPR006595 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 62 | 94 | 8.853437 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 312 | 353 | 14.284707 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 524 | 559 | 11.629227 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 267 | 301 | 11.878597 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 312 | 349 | 10.917412 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 388 | 8.837541 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 524 | 566 | 14.117617 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 267 | 301 | 9.915599 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 373 | 387 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 286 | 300 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 286 | 300 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 544 | 558 | 3.3E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 373 | 387 | 3.3E-5 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 20 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 19 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_011085429.1 | WD repeat-containing protein 26 [Sesamum indicum] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TM09 | WD repeat-containing protein 26 OS=Sesamum indicum OX=4182 GN=LOC105167421 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology