Basic Information
Locus ID:
jg24038
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Sister chromatid cohesion protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17652592 | 17660730 | - | jg24038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 98,760.77 Da | 49.58 | 71.39 | -0.78 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF48371 | ARM repeat | 65 | 250 | 1.63E-9 | IPR016024 |
| SUPERFAMILY | SSF63748 | Tudor/PWWP/MBT | 596 | 638 | 1.13E-7 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 30 | 262 | 2.0E-5 | IPR011989 |
| Gene3D | G3DSA:2.30.30.140 | - | 594 | 645 | 2.5E-11 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 822 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 421 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 585 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 778 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 779 | 806 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 656 | 845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 828 | 845 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 588 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 483 | - | - |
| Coils | Coil | Coil | 418 | 438 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G31880.2 | 0 | |
| RefSeq | XP_020550223.1 | hepatoma-derived growth factor-related protein 2 [Sesamum indicum] | 0 |
| Q8GUP3 | Sister chromatid cohesion protein PDS5 homolog C OS=Arabidopsis thaliana OX=3702 GN=PDS5C PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TA68 | hepatoma-derived growth factor-related protein 2 OS=Sesamum indicum OX=4182 GN=LOC105164535 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology