Basic Information
Locus ID:
jg24027
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 17535125 | 17543423 | + | jg24027 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.97 | 131,987.66 Da | 45.59 | 92.80 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17814 | LisH-like dimerisation domain | 14 | 41 | 3.8E-5 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 427 | 464 | 0.002 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 876 | 911 | 0.0026 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 804 | 1059 | 1.42E-28 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 314 | 639 | 4.68E-44 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 773 | 1011 | 7.1E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 524 | 765 | 4.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 245 | 521 | 2.4E-29 | IPR015943 |
| SMART | SM00320 | WD40_4 | 600 | 641 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 511 | 554 | 52.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 557 | 597 | 5.4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 423 | 464 | 0.0024 | IPR001680 |
| SMART | SM00668 | ctlh | 42 | 100 | 5.2E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 829 | 869 | 56.0 | IPR001680 |
| SMART | SM00667 | Lish | 12 | 44 | 8.9E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 315 | 355 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 376 | 416 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 872 | 911 | 2.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 467 | 508 | 0.44 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 879 | 911 | 12.246197 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 879 | 911 | 10.205597 | - |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 12 | 44 | 9.5628 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 42 | 100 | 13.476432 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 430 | 473 | 10.742378 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 575 | 606 | 10.074014 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_011081521.1 | protein TPR3-like isoform X3 [Sesamum indicum] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9TF83 | protein TPR3-like isoform X3 OS=Sesamum indicum OX=4182 GN=LOC105164551 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology